What Is Endoscope Reprocessing Software?

Endoscope reprocessing software is a digital system that tracks and documents each step of the scope cleaning, disinfection, and storage process. These platforms standardize the cleaning process in order to reduce manual work, verify required steps, and maintain consistent, audit-ready records for surveys and internal quality checks.

With reprocessing software, teams can:
  Follow standardized workflows
  Maintain standardized digital documentation
 Reduce reprocessing errors and patient safety risks

Learn more in our Guide to Automated Endoscope Reprocessing  →

Using endoscope reprocessing software in an SPD
woman performing endoscope leak testing

Guide to Endoscope Leak Testing

Learn how leak testing works and why it is required before reprocessing.

Read about leak testing requirements →

6-Ways-flexible-endoscope-tracking-systems-enhance-workflow Efficiency

Workflow Benefits of Endoscope Tracking

Explore ways tracking systems improve efficiency throughout the workflow.

Read about workflow efficiency 

endoscope-tracking-software-perioperative-infections

Preventing Infections with Scope Tracking

See how tracking supports infection prevention and reduces safety risks.

Read about infection prevention 

How Reprocessing Software Supports the Scope Workflow


Endoscope reprocessing involves several critical phases. Software ties these steps together, creating visibility and ensuring every requirement is completed and recorded correctly.

Tracking & Workflow Visibility
Software tracks scopes throughout the cleaning cycle, confirming that required steps are completed in the proper, validated sequence. Real-time workflow visibility helps teams prevent delays, misplaced scopes, and incomplete processing.

Automated Endoscope Reprocessor (AER) & High-Level Disinfection (HLD) Data Capture
Systems connected to AERs automatically pull cycle data, verify HLD completion, and document all cycle parameters for workflow consistency. This supports reliable disinfection practices and simplifies reviews across the entire reprocessing lifecycle.

Documentation & Audit Trails
Digital reprocessing tools have logs to store timestamps, operators, cycle results, and storage details. These records help teams stay aligned with AAMI ST91, Joint Commission and DNV expectations, and internal quality policies.

Read more on the benefits of Automated Endoscope Reprocessing →

Technician scanning an endoscope to track workflow steps and confirm processing requirements

Compliance & Quality Considerations


Compliance depends on showing that each reprocessing step was completed, from leak testing through high level disinfection and storage. Manual documentation makes it difficult to confirm this and to give surveyors a clear record of how scopes were handled.

Reprocessing software captures each step automatically. Teams can review cycle histories, verify HLD results, and demonstrate that scopes were processed and stored in accordance with AAMI ST91, Joint Commission and DNV standards.

Consistent digital records help teams stay prepared for surveys and reduce the risk of reprocessing gaps.

Discover common scope reprocessing failures and learn how to avoid them →

Technician reviewing AER cycle data as part of high-level disinfection tracking.

How ScopeTrac Advanced Supports Reprocessing


ScopeTrac Advanced guides technicians through each reprocessing step with clear digital workflows. Automated documentation, readiness indicators, and real-time workflow visibility all work together to help teams improve overall documentation accuracy.  This helps hospitals reduce reprocessing risks, and simplify compliance during internal reviews and external surveys.


Learn how to use ScopeTrac Advanced for the best endoscope reprocessing workflows

Reviewing digital documentation and audit trails for endoscope reprocessing.

Why Choose Censis

Censis supports hospitals by strengthening  reprocessing consistency, reducing infection risk, and meeting leading regulatory standards. Trusted by more than 1,300 hospitals, our solutions offer full visibility and standardized workflows across the entire endoscope lifecycle. 

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